3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08521

Details:

PFam ID : PF08521

PFam Domain Description : Two-component sensor kinase N-terminal

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 323

Average sequence length: 143.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08521	E6PWK4_9ZZZZ_38_219	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08521	E6PWK4_9ZZZZ_38_219	100

Sequence based PCA Plot of the family - PF08521 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=108 Length=8
Motif3 Start=22 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay