3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08520

Details:

PFam ID : PF08520

PFam Domain Description : Fungal protein of unknown function (DUF1748)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 72

Average sequence length: 69.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08520	D3B9E3_POLPA_1_70	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08520	E3KXT8_PUCGT_3_72	100

Sequence based PCA Plot of the family - PF08520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=47 Length=8
Motif3 Start=31 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay