3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08517

Details:

PFam ID : PF08517

PFam Domain Description : Ataxin-1 and HBP1 module (AXH)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 50

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08517	A2A0G4_9BACT_585_667	68.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08517	E3WQK9_ANODA_761_884	100

Sequence based PCA Plot of the family - PF08517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay