3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08516

Details:

PFam ID : PF08516

PFam Domain Description : ADAM cysteine-rich

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 404

Average sequence length: 108.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08516	A7X4H7_LEIMD_1_58	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08516	O17569_CAEEL_466_594	100

Sequence based PCA Plot of the family - PF08516 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=20
Motif2 Start=2 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay