3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08515

Details:

PFam ID : PF08515

PFam Domain Description : Transforming growth factor beta type I GS-motif

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 81

Average sequence length: 27.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08515	C3Z5A4_BRAFL_201_222	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08515	E5S419_TRISP_217_238	100

Sequence based PCA Plot of the family - PF08515 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay