3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08513

Details:

PFam ID : PF08513

PFam Domain Description : LisH

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 349

Average sequence length: 26.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08513	E9CE71_9EUKA_9_35	40.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08513	E9CE71_9EUKA_9_35	96.2

Sequence based PCA Plot of the family - PF08513 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay