3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08512

Details:

PFam ID : PF08512

PFam Domain Description : Histone chaperone Rttp106-like

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 265

Average sequence length: 91.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08512	E3LF47_CAERE_51_124	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08512	A4I7I5_LEIIN_337_429	100

Sequence based PCA Plot of the family - PF08512 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8
Motif4 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay