3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08506

Details:

PFam ID : PF08506

PFam Domain Description : Cse1

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 255

Average sequence length: 297.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08506	A2G511_TRIVA_149_501	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08506	A5DUQ0_LODEL_295_538	100

Sequence based PCA Plot of the family - PF08506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=326 Length=8
Motif2 Start=67 Length=8
Motif3 Start=1 Length=8
Motif4 Start=195 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay