3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08503

Details:

PFam ID : PF08503

PFam Domain Description : Tetrahydrodipicolinate succinyltransferase N-terminal

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 159

Average sequence length: 81.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08503	A4IYA2_FRATW_47_133	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08503	DAPH_METKA_7_95	100

Sequence based PCA Plot of the family - PF08503 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay