3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08502

Details:

PFam ID : PF08502

PFam Domain Description : LeuA allosteric (dimerisation) domain

Number of Sequence in 50% Dataset : 173

Number of Sequence in Full Dataset : 1557

Average sequence length: 135.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08502	A4IYA2_FRATW_47_133	79.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08502	D0MYD7_PHYIT_409_562	100

Sequence based PCA Plot of the family - PF08502 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=8
Motif2 Start=2 Length=8
Motif3 Start=133 Length=20
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay