3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08500

Details:

PFam ID : PF08500

PFam Domain Description : Tombusvirus p33

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 26

Average sequence length: 139.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08500	D3U5B5_9TOMB_29_206	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08500	Q84831_9TOMB_80_214	100

Sequence based PCA Plot of the family - PF08500 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay