3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08499

Details:

PFam ID : PF08499

PFam Domain Description : 3'5'-cyclic nucleotide phosphodiesterase N-terminal

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 33

Average sequence length: 53.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08499	Q9EPS1_RAT_73_108	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08499	A7SGA1_NEMVE_2_58	90.6

Sequence based PCA Plot of the family - PF08499 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay