3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08495

Details:

PFam ID : PF08495

PFam Domain Description : FIST C domain

Number of Sequence in 50% Dataset : 253

Number of Sequence in Full Dataset : 528

Average sequence length: 191.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08495	A1CVN1_NEOFI_8_298	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08495	D0MVQ8_PHYIT_554_792	99.6

Sequence based PCA Plot of the family - PF08495 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=86 Length=8
Motif3 Start=175 Length=8
Motif4 Start=158 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay