3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08494

Details:

PFam ID : PF08494

PFam Domain Description : DEAD/H associated

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 527

Average sequence length: 185.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08494	A1CVN1_NEOFI_8_298	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08494	E8R183_ISOPI_749_959	100

Sequence based PCA Plot of the family - PF08494 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=11
Motif2 Start=97 Length=11
Motif3 Start=175 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay