3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08489

Details:

PFam ID : PF08489

PFam Domain Description : Domain of unknown function (DUF1743)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 137

Average sequence length: 116.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08489	TIAS_METKA_135_252	68.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08489	TIAS_METKA_135_252	68

Sequence based PCA Plot of the family - PF08489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=34 Length=14
Motif2 Start=2 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay