3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08487

Details:

PFam ID : PF08487

PFam Domain Description : Vault protein inter-alpha-trypsin domain

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 332

Average sequence length: 114.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08487	E4X218_OIKDI_447_559	69.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08487	E8WWD4_ACISM_37_161	99.6

Sequence based PCA Plot of the family - PF08487 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay