3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08484

Details:

PFam ID : PF08484

PFam Domain Description : C-methyltransferase C-terminal domain

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 309

Average sequence length: 146.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08484	B1QL97_CLOBO_1_97	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08484	E6V0G6_VARPD_239_408	100

Sequence based PCA Plot of the family - PF08484 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=67 Length=14
Motif3 Start=13 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay