3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08481

Details:

PFam ID : PF08481

PFam Domain Description : GBS Bsp-like repeat

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 290

Average sequence length: 90.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08481	B1SEW9_9STRE_343_394	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08481	C8WIX6_EGGLE_879_975	100

Sequence based PCA Plot of the family - PF08481 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay