3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08477

Details:

PFam ID : PF08477

PFam Domain Description : Miro-like protein

Number of Sequence in 50% Dataset : 184

Number of Sequence in Full Dataset : 561

Average sequence length: 117.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08477	A5KC10_PLAVS_8_167	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08477	B7FZ98_PHATC_24_185	100

Sequence based PCA Plot of the family - PF08477 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=6 Length=17
Motif3 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay