3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08476

Details:

PFam ID : PF08476

PFam Domain Description : Viral D10 N-terminal

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 12

Average sequence length: 41.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08476	Q6JK76_9CBAC_1_182	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08476	Q1PIT4_9POXV_1_45	100

Sequence based PCA Plot of the family - PF08476 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay