3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08475

Details:

PFam ID : PF08475

PFam Domain Description : Viral capsid protein 91 N-terminal

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 44

Average sequence length: 182.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08475	Q6JK76_9CBAC_1_182	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08475	Q6QXL2_GVAS_7_208	100

Sequence based PCA Plot of the family - PF08475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=90 Length=8
Motif3 Start=118 Length=11
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay