3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08474

Details:

PFam ID : PF08474

PFam Domain Description : Myelin transcription factor 1

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 24

Average sequence length: 207.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08474	E9IZQ6_SOLIN_344_424	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08474	F1QS80_DANRE_132_395	100

Sequence based PCA Plot of the family - PF08474 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=8
Motif3 Start=256 Length=8
Motif4 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay