3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08471

Details:

PFam ID : PF08471

PFam Domain Description : Class II vitamin B12-dependent ribonucleotide reductase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 168

Average sequence length: 99.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08471	C9D4A5_9RHOB_1_50	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08471	B5JQN3_9BACT_66_150	100

Sequence based PCA Plot of the family - PF08471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=74 Length=8
Motif2 Start=12 Length=8
Motif3 Start=24 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay