3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08468

Details:

PFam ID : PF08468

PFam Domain Description : Methyltransferase small domain N-terminal

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 149

Average sequence length: 146.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08468	A1B2V8_PARDP_33_142	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08468	RSMC_COLP3_11_178	100

Sequence based PCA Plot of the family - PF08468 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=92 Length=8
Motif3 Start=1 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay