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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08466
Details:

PFam ID : PF08466

PFam Domain Description : Inward rectifier potassium channel N-terminal

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 17

Average sequence length: 41.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08466Q69328_SHV2_40_64No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08466Q6L5N3_HUMAN_2_46100
Sequence based PCA Plot of the family - PF08466 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay