3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08464

Details:

PFam ID : PF08464

PFam Domain Description : Geminivirus AC4/5 conserved region

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 46

Average sequence length: 42.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08464	D9SDG5_GALCS_613_696	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08464	YAL4_ICMV_99_141	100

Sequence based PCA Plot of the family - PF08464 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay