3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08463

Details:

PFam ID : PF08463

PFam Domain Description : EcoEI R protein C-terminal

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 453

Average sequence length: 156.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08463	D9SDG5_GALCS_613_696	45.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08463	B0URP6_HAES2_759_945	81

Sequence based PCA Plot of the family - PF08463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=40 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay