3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08462

Details:

PFam ID : PF08462

PFam Domain Description : Carmovirus coat protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 4

Average sequence length: 74

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08462	B1MEQ1_MYCA9_12_67	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08462	Q1PGJ8_9TOMB_247_345	100

Sequence based PCA Plot of the family - PF08462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay