3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08460

Details:

PFam ID : PF08460

PFam Domain Description : Bacterial SH3 domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 197

Average sequence length: 64.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08460	D3EXZ1_STAA4_2_49	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08460	E5WGA1_9BACI_23_78	100

Sequence based PCA Plot of the family - PF08460 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=60 Length=8
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay