3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08459

Details:

PFam ID : PF08459

PFam Domain Description : UvrC Helix-hairpin-helix N-terminal

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 1148

Average sequence length: 161.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08459	B9IKK0_POPTR_1_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08459	A9EYQ9_SORC5_390_650	100

Sequence based PCA Plot of the family - PF08459 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=43 Length=8
Motif3 Start=11 Length=14
Motif4 Start=247 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay