3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08449

Details:

PFam ID : PF08449

PFam Domain Description : UAA transporter family

Number of Sequence in 50% Dataset : 221

Number of Sequence in Full Dataset : 668

Average sequence length: 267.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08449	D8JB63_HALJB_76_192	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08449	Q59WJ9_CANAL_191_463	100

Sequence based PCA Plot of the family - PF08449 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=122 Length=8
Motif3 Start=36 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay