3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08445

Details:

PFam ID : PF08445

PFam Domain Description : FR47-like protein

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 401

Average sequence length: 82.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08445	A6AKE5_VIBHA_149_223	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08445	E1PS33_MYCFJ_162_260	100

Sequence based PCA Plot of the family - PF08445 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=75 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay