3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08442

Details:

PFam ID : PF08442

PFam Domain Description : ATP-grasp domain

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 1138

Average sequence length: 194.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08442	Q69HR1_CIOIN_1_416	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08442	E8R0E1_ISOPI_2_236	100

Sequence based PCA Plot of the family - PF08442 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=2 Length=8
Motif4 Start=57 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay