3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08441

Details:

PFam ID : PF08441

PFam Domain Description : Integrin alpha

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 334

Average sequence length: 388.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08441	Q69HR1_CIOIN_1_416	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08441	B3Y523_CYPCA_1_199	100

Sequence based PCA Plot of the family - PF08441 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=188 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay