3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08439

Details:

PFam ID : PF08439

PFam Domain Description : Oligopeptidase F

Number of Sequence in 50% Dataset : 131

Number of Sequence in Full Dataset : 723

Average sequence length: 68.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08439	E7Q4B4_YEASB_226_276	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08439	F0SLY7_PLABD_100_180	100

Sequence based PCA Plot of the family - PF08439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=30 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay