3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08437

Details:

PFam ID : PF08437

PFam Domain Description : Glycosyl transferase family 8 C-terminal

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 48

Average sequence length: 55.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08437	D1P7H1_9ENTR_265_321	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08437	D1P7H1_9ENTR_265_321	100

Sequence based PCA Plot of the family - PF08437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay