3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08436

Details:

PFam ID : PF08436

PFam Domain Description : 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 871

Average sequence length: 85.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08436	D0EFP3_9CALI_36_147	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08436	A4GKG8_MESVI_41_111	100

Sequence based PCA Plot of the family - PF08436 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=53 Length=19
Motif3 Start=3 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay