3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08435

Details:

PFam ID : PF08435

PFam Domain Description : Calicivirus coat protein C-terminal

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 88

Average sequence length: 167.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08435	D0EFP3_9CALI_36_147	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08435	Q3V574_9CALI_320_550	100

Sequence based PCA Plot of the family - PF08435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay