3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08434

Details:

PFam ID : PF08434

PFam Domain Description : Calcium-activated chloride channel

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 90

Average sequence length: 205.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08434	E9GPR1_DAPPU_1_273	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08434	E9GPR1_DAPPU_1_273	100

Sequence based PCA Plot of the family - PF08434 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=69 Length=8
Motif3 Start=260 Length=8
Motif4 Start=166 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay