3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08433

Details:

PFam ID : PF08433

PFam Domain Description : Chromatin associated protein KTI12

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 231

Average sequence length: 259.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08433	C1EHE3_MICSR_17_212	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08433	C1N0T7_MICPC_29_364	100

Sequence based PCA Plot of the family - PF08433 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=126 Length=8
Motif2 Start=137 Length=8
Motif3 Start=266 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay