3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08432

Details:

PFam ID : PF08432

PFam Domain Description : Fungal protein of unknown function (DUF1742)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 68

Average sequence length: 163.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08432	B2AEJ3_PODAN_146_217	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08432	C5DHS7_LACTC_3_205	100

Sequence based PCA Plot of the family - PF08432 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=153 Length=11
Motif4 Start=195 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay