3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08430

Details:

PFam ID : PF08430

PFam Domain Description : Forkhead N-terminal region

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 63

Average sequence length: 115.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08430	E5S3X6_TRISP_8_157	7.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08430	Q50H73_NEMVE_1_39	90.3

Sequence based PCA Plot of the family - PF08430 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay