3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08426

Details:

PFam ID : PF08426

PFam Domain Description : ICE2

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 62

Average sequence length: 348.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08426	A8N1D3_COPC7_169_271	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08426	C4R2K1_PICPG_13_447	100

Sequence based PCA Plot of the family - PF08426 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=8
Motif2 Start=22 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay