3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08424

Details:

PFam ID : PF08424

PFam Domain Description : NRDE-2, necessary for RNA interference

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 142

Average sequence length: 249.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08424	A8JCP1_CHLRE_170_264	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08424	Q8IR40_DROME_125_206	99.2

Sequence based PCA Plot of the family - PF08424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=18
Motif2 Start=11 Length=8
Motif3 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay