3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08418

Details:

PFam ID : PF08418

PFam Domain Description : DNA polymerase alpha subunit B N-terminal

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 129

Average sequence length: 204.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08418	F2TCP6_AJEDE_12_168	80.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08418	D8UDF3_VOLCA_21_278	100

Sequence based PCA Plot of the family - PF08418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=235 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay