3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08411

Details:

PFam ID : PF08411

PFam Domain Description : Exonuclease C-terminal

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 223

Average sequence length: 255.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08411	Q1V1P5_PELUB_223_468	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08411	B3PLL7_CELJU_210_489	100

Sequence based PCA Plot of the family - PF08411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=11
Motif2 Start=1 Length=11
Motif3 Start=123 Length=17
Motif4 Start=165 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay