3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08410

Details:

PFam ID : PF08410

PFam Domain Description : Domain of unknown function (DUF1737)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 103

Average sequence length: 54.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08410	D6PD83_9BACT_1_56	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08410	B7MRX3_ECO81_8_62	100

Sequence based PCA Plot of the family - PF08410 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay