3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08409

Details:

PFam ID : PF08409

PFam Domain Description : Domain of unknown function (DUF1736)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 125

Average sequence length: 78.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08409	D8LTI0_ECTSI_250_302	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08409	B7FRZ9_PHATC_258_337	100

Sequence based PCA Plot of the family - PF08409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=18
Motif2 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay