3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08407

Details:

PFam ID : PF08407

PFam Domain Description : Chitin synthase N-terminal

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 152

Average sequence length: 78.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08407	CHS1_EXODE_181_267	35.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08407	CHS2_SCHPO_174_252	100

Sequence based PCA Plot of the family - PF08407 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=58 Length=8
Motif2 Start=70 Length=8
Motif3 Start=13 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay