3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08406

Details:

PFam ID : PF08406

PFam Domain Description : CbbQ/NirQ/NorQ C-terminal

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 244

Average sequence length: 84.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08406	E8YQK9_9BURK_317_403	21.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08406	E8T6V8_THEA1_293_387	100

Sequence based PCA Plot of the family - PF08406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=1 Length=11
Motif3 Start=67 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay